要使用Android Room存储对象层次结构并查询超类，可以按照以下步骤进行解决：

1. 定义超类和子类的实体类：

@Entity
open class Animal(
    @PrimaryKey val id: Int,
    val name: String
)

@Entity
data class Cat(
    val color: String
) : Animal(id, name)

2. 创建超类和子类的DAO接口：

@Dao
interface AnimalDao {
    @Insert
    fun insertAnimal(animal: Animal)

    @Query("SELECT * FROM Animal")
    fun getAllAnimals(): List
}

@Dao
interface CatDao {
    @Insert
    fun insertCat(cat: Cat)

    @Query("SELECT * FROM Animal WHERE id = :id")
    fun getAnimalById(id: Int): Animal

    @Query("SELECT * FROM Animal WHERE id = :id")
    fun getCatById(id: Int): Cat
}

3. 创建数据库类，并将超类和子类的DAO接口添加到数据库类中：

@Database(entities = [Animal::class, Cat::class], version = 1)
abstract class AnimalDatabase : RoomDatabase() {
    abstract fun animalDao(): AnimalDao
    abstract fun catDao(): CatDao

    companion object {
        @Volatile
        private var INSTANCE: AnimalDatabase? = null

        fun getDatabase(context: Context): AnimalDatabase {
            return INSTANCE ?: synchronized(this) {
                val instance = Room.databaseBuilder(
                    context.applicationContext,
                    AnimalDatabase::class.java,
                    "animal_database"
                ).build()
                INSTANCE = instance
                instance
            }
        }
    }
}

4. 在Activity或Fragment中使用数据库和DAO进行操作：

class MainActivity : AppCompatActivity() {
    private lateinit var animalDao: AnimalDao
    private lateinit var catDao: CatDao

    override fun onCreate(savedInstanceState: Bundle?) {
        super.onCreate(savedInstanceState)
        setContentView(R.layout.activity_main)

        val animalDatabase = AnimalDatabase.getDatabase(this)
        animalDao = animalDatabase.animalDao()
        catDao = animalDatabase.catDao()

        val animal = Animal(1, "Animal")
        val cat = Cat("Black")

        animalDao.insertAnimal(animal)
        catDao.insertCat(cat)

        val allAnimals = animalDao.getAllAnimals()
        for (animal in allAnimals) {
            if (animal is Cat) {
                val cat = catDao.getCatById(animal.id)
                // Do something with the cat
            } else {
                val animal = animalDao.getAnimalById(animal.id)
                // Do something with the animal
            }
        }
    }
}

通过以上步骤，您就可以使用Android Room存储对象层次结构并查询超类了。在查询时，您可以使用子类的DAO接口来获取子类的特定属性。